Detailed information of SNP:
|
SNP ID:
sf0807908283(Gbrowse)
Chromosome: chr08 Position: 7908283 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.51% | 37.49% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807908283 | A->G | INTERGENIC | None |