Detailed information of SNP:
|
SNP ID:
sf0807909372(Gbrowse)
Chromosome: chr08 Position: 7909372 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.83% | 37.17% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807909372 | T->C | INTERGENIC | None |