Detailed information of SNP:
|
SNP ID:
sf0807918584(Gbrowse)
Chromosome: chr08 Position: 7918584 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.61% | 36.39% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807918584 | T->G | INTERGENIC | None |