Detailed information of SNP:
|
SNP ID:
sf0807993968(Gbrowse)
Chromosome: chr08 Position: 7993968 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 93.90% | 6.10% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 488 | 82.99% | 17.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 93.69% | 6.31% |
| Tropical Japonica | 88 | 38.64% | 61.36% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0807993968 | G->T | LOC_Os08g13440(LOC_Os08g13440.3) | Non-Synonymous SNP |
| sf0807993968 | G->T | LOC_Os08g13440(LOC_Os08g13440.1) | Non-Synonymous SNP |
| sf0807993968 | G->T | LOC_Os08g13440(LOC_Os08g13440.2) | Non-Synonymous SNP |