Detailed information of SNP:
|
SNP ID:
sf0808033902(Gbrowse)
Chromosome: chr08 Position: 8033902 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 54.67% | 45.33% |
| All Indica | 797 | 83.06% | 16.94% |
| All Japonica | 492 | 7.32% | 92.68% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 332 | 2.71% | 97.29% |
| Tropical Japonica | 92 | 17.39% | 82.61% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808033902 | G->A | LOC_Os08g13500(LOC_Os08g13500.1) | Synonymous |