Detailed information of SNP:
|
SNP ID:
sf0808039059(Gbrowse)
Chromosome: chr08 Position: 8039059 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 64.73% | 35.27% |
| All Indica | 797 | 94.10% | 5.90% |
| All Japonica | 491 | 9.78% | 90.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 331 | 4.23% | 95.77% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 66 | 24.24% | 75.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808039059 | T->C | LOC_Os08g13520(LOC_Os08g13520.1) | Non-Synonymous SNP |