Detailed information of SNP:
|
SNP ID:
sf0808041729(Gbrowse)
Chromosome: chr08 Position: 8041729 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.98% | 37.02% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 12.27% | 87.73% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808041729 | T->C | INTERGENIC | None |