Detailed information of SNP:
|
SNP ID:
sf0808042325(Gbrowse)
Chromosome: chr08 Position: 8042325 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.88% | 49.12% |
| All Indica | 797 | 18.44% | 81.56% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 10.43% | 89.57% |
| Indica II | 212 | 39.15% | 60.85% |
| Indica Intermediate | 211 | 11.85% | 88.15% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808042325 | C->T | INTERGENIC | None |