Detailed information of SNP:
|
SNP ID:
sf0808045265(Gbrowse)
Chromosome: chr08 Position: 8045265 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 54.07% | 45.93% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 493 | 3.85% | 96.15% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 65 | 12.31% | 87.69% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808045265 | C->T | INTERGENIC | None |