Detailed information of SNP:
|
SNP ID:
sf0808051787(Gbrowse)
Chromosome: chr08 Position: 8051787 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.29% | 35.71% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 12.47% | 87.53% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808051787 | T->C | INTERGENIC | None |