Detailed information of SNP:
|
SNP ID:
sf0808052960(Gbrowse)
Chromosome: chr08 Position: 8052960 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 96.24% | 3.76% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 490 | 97.55% | 2.45% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 88 | 92.05% | 7.95% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808052960 | G->A | LOC_Os08g13550(LOC_Os08g13550.1) | Synonymous |