Detailed information of SNP:
|
SNP ID:
sf0808071183(Gbrowse)
Chromosome: chr08 Position: 8071183 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 59.10% | 40.90% |
| All Indica | 794 | 86.90% | 13.10% |
| All Japonica | 470 | 7.02% | 92.98% |
| Aus | 57 | 100.00% | 0.00% |
| Indica I | 373 | 85.52% | 14.48% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 324 | 2.47% | 97.53% |
| Tropical Japonica | 92 | 19.57% | 80.43% |
| Japonica Intermediate | 54 | 12.96% | 87.04% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808071183 | A->G | INTERGENIC | None |