Detailed information of SNP:
|
SNP ID:
sf0808076574(Gbrowse)
Chromosome: chr08 Position: 8076574 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 60.06% | 39.94% |
| All Indica | 796 | 90.70% | 9.30% |
| All Japonica | 485 | 5.98% | 94.02% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 373 | 89.54% | 10.46% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 331 | 1.51% | 98.49% |
| Tropical Japonica | 91 | 19.78% | 80.22% |
| Japonica Intermediate | 63 | 9.52% | 90.48% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808076574 | T->C | LOC_Os08g13590(LOC_Os08g13590.1) | INTRON |