Detailed information of SNP:
|
SNP ID:
sf0808099779(Gbrowse)
Chromosome: chr08 Position: 8099779 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 60.93% | 39.07% |
| All Indica | 795 | 91.95% | 8.05% |
| All Japonica | 489 | 6.95% | 93.05% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 373 | 90.88% | 9.12% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 332 | 2.71% | 97.29% |
| Tropical Japonica | 92 | 16.30% | 83.70% |
| Japonica Intermediate | 65 | 15.38% | 84.62% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808099779 | A->G | LOC_Os08g13620(LOC_Os08g13620.1) | Non-Synonymous SNP |