Detailed information of SNP:
|
SNP ID:
sf0808161485(Gbrowse)
Chromosome: chr08 Position: 8161485 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 93.35% | 6.65% |
| All Indica | 794 | 99.87% | 0.13% |
| All Japonica | 496 | 89.92% | 10.08% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808161485 | G->C | LOC_Os08g13699(LOC_Os08g13699.1) | INTRON |