Detailed information of SNP:
|
SNP ID:
sf0808190691(Gbrowse)
Chromosome: chr08 Position: 8190691 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 94.15% | 5.85% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808190691 | A->C | LOC_Os08g13740(LOC_Os08g13740.1) | Non-Synonymous SNP |