Detailed information of SNP:
|
SNP ID:
sf0808193227(Gbrowse)
Chromosome: chr08 Position: 8193227 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 97.69% | 2.31% |
| All Indica | 793 | 98.61% | 1.39% |
| All Japonica | 424 | 95.52% | 4.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 97.03% | 2.97% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 274 | 93.80% | 6.20% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 59 | 98.31% | 1.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808193227 | G->T | INTERGENIC | None |