Detailed information of SNP:
|
SNP ID:
sf0808209053(Gbrowse)
Chromosome: chr08 Position: 8209053 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 50.57% | 49.43% |
| All Indica | 791 | 22.12% | 77.88% |
| All Japonica | 496 | 96.17% | 3.83% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 371 | 17.25% | 82.75% |
| Indica II | 210 | 21.43% | 78.57% |
| Indica Intermediate | 210 | 31.43% | 68.57% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808209053 | C->G | INTERGENIC | None |