Detailed information of SNP:
|
SNP ID:
sf0808211495(Gbrowse)
Chromosome: chr08 Position: 8211495 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 95.90% | 4.10% |
| All Indica | 795 | 95.60% | 4.40% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 210 | 87.14% | 12.86% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808211495 | T->C | INTERGENIC | None |