Detailed information of SNP:
|
SNP ID:
sf0808212479(Gbrowse)
Chromosome: chr08 Position: 8212479 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 58.98% | 41.02% |
| All Indica | 797 | 90.09% | 9.91% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808212479 | A->G | INTERGENIC | None |