Detailed information of SNP:
|
SNP ID:
sf0808231380(Gbrowse)
Chromosome: chr08 Position: 8231380 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 94.92% | 5.08% |
| All Indica | 759 | 91.17% | 8.83% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 356 | 89.61% | 10.39% |
| Indica II | 207 | 94.20% | 5.80% |
| Indica Intermediate | 196 | 90.82% | 9.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808231380 | C->T | LOC_Os08g13800(LOC_Os08g13800.1) | INTRON |