Detailed information of SNP:
|
SNP ID:
sf0808244245(Gbrowse)
Chromosome: chr08 Position: 8244245 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 98.99% | 1.01% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 466 | 97.00% | 3.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 95.54% | 4.46% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808244245 | C->T | LOC_Os08g13810(LOC_Os08g13810.1) | Synonymous |