Detailed information of SNP:
|
SNP ID:
sf0808249961(Gbrowse)
Chromosome: chr08 Position: 8249961 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1338 | 91.33% | 8.67% |
| All Indica | 790 | 99.49% | 0.51% |
| All Japonica | 425 | 73.88% | 26.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 281 | 64.77% | 35.23% |
| Tropical Japonica | 88 | 94.32% | 5.68% |
| Japonica Intermediate | 56 | 87.50% | 12.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808249961 | A->T | INTERGENIC | None |