Detailed information of SNP:
|
SNP ID:
sf0808262985(Gbrowse)
Chromosome: chr08 Position: 8262985 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.56% | 37.44% |
| All Indica | 795 | 93.96% | 6.04% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808262985 | T->C | INTERGENIC | None |