Detailed information of SNP:
|
SNP ID:
sf0808269564(Gbrowse)
Chromosome: chr08 Position: 8269564 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 61.09% | 38.91% |
| All Indica | 793 | 93.32% | 6.68% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808269564 | G->C | INTERGENIC | None |