Detailed information of SNP:
|
SNP ID:
sf0808275380(Gbrowse)
Chromosome: chr08 Position: 8275380 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 96.68% | 3.32% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 93.55% | 6.45% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808275380 | T->C | LOC_Os08g13860(LOC_Os08g13860.1) | INTRON |