Detailed information of SNP:
|
SNP ID:
sf0808331753(Gbrowse)
Chromosome: chr08 Position: 8331753 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 68.15% | 31.85% |
| All Indica | 798 | 50.00% | 50.00% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 44.80% | 55.20% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808331753 | G->A | INTERGENIC | None |