Detailed information of SNP:
|
SNP ID:
sf0808344600(Gbrowse)
Chromosome: chr08 Position: 8344600 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 96.40% | 3.60% |
| All Indica | 776 | 95.88% | 4.12% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 41 | 70.73% | 29.27% |
| Indica I | 359 | 94.15% | 5.85% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 9 | 66.67% | 33.33% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808344600 | C->A | LOC_Os08g13930(LOC_Os08g13930.1) | INTRON |