Detailed information of SNP:
|
SNP ID:
sf0808349905(Gbrowse)
Chromosome: chr08 Position: 8349905 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 97.46% | 2.54% |
| All Indica | 773 | 96.64% | 3.36% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 54 | 90.74% | 9.26% |
| Indica I | 368 | 97.28% | 2.72% |
| Indica II | 200 | 96.50% | 3.50% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808349905 | G->A | INTERGENIC | None |