Detailed information of SNP:
|
SNP ID:
sf0808370718(Gbrowse)
Chromosome: chr08 Position: 8370718 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 95.44% | 4.56% |
| All Indica | 786 | 95.17% | 4.83% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 371 | 95.42% | 4.58% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 202 | 92.08% | 7.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808370718 | G->A | LOC_Os08g13960(LOC_Os08g13960.1) | INTRON |