Detailed information of SNP:
|
SNP ID:
sf0808406658(Gbrowse)
Chromosome: chr08 Position: 8406658 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 88.54% | 11.46% |
| All Indica | 775 | 82.45% | 17.55% |
| All Japonica | 489 | 96.52% | 3.48% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 363 | 75.76% | 24.24% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 205 | 84.39% | 15.61% |
| Temperate Japonica | 332 | 96.39% | 3.61% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808406658 | G->A | LOC_Os08g14020(LOC_Os08g14020.1) | INTRON |