Detailed information of SNP:
|
SNP ID:
sf0808406679(Gbrowse)
Chromosome: chr08 Position: 8406679 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 95.01% | 4.99% |
| All Indica | 793 | 94.83% | 5.17% |
| All Japonica | 471 | 95.54% | 4.46% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 330 | 95.76% | 4.24% |
| Tropical Japonica | 75 | 90.67% | 9.33% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808406679 | C->A | LOC_Os08g14020(LOC_Os08g14020.1) | INTRON |