Detailed information of SNP:
|
SNP ID:
sf0808422026(Gbrowse)
Chromosome: chr08 Position: 8422026 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.27% | 26.73% |
| All Indica | 798 | 62.28% | 37.72% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 45.45% | 54.55% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808422026 | C->T | INTERGENIC | None |