Detailed information of SNP:
|
SNP ID:
sf0808425463(Gbrowse)
Chromosome: chr08 Position: 8425463 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 88.23% | 11.77% |
| All Indica | 790 | 83.04% | 16.96% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 367 | 81.74% | 18.26% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808425463 | A->G | INTERGENIC | None |