Detailed information of SNP:
|
SNP ID:
sf0808427152(Gbrowse)
Chromosome: chr08 Position: 8427152 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 97.02% | 2.98% |
| All Indica | 790 | 97.22% | 2.78% |
| All Japonica | 495 | 97.17% | 2.83% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808427152 | G->A | LOC_Os08g14080(LOC_Os08g14080.1) | INTRON |