Detailed information of SNP:
|
SNP ID:
sf0808427266(Gbrowse)
Chromosome: chr08 Position: 8427266 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 76.36% | 23.64% |
| All Indica | 798 | 94.86% | 5.14% |
| All Japonica | 496 | 42.94% | 57.06% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 334 | 35.33% | 64.67% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808427266 | A->G | LOC_Os08g14080(LOC_Os08g14080.1) | INTRON |
| sf0808427266 | A->G | LOC_Os08g14080(LOC_Os08g14080.1) | SNPs that disrupt splice sites |