Detailed information of SNP:
|
SNP ID:
sf0808430671(Gbrowse)
Chromosome: chr08 Position: 8430671 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 87.13% | 12.87% |
| All Indica | 786 | 81.04% | 18.96% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 366 | 77.32% | 22.68% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 207 | 79.71% | 20.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808430671 | G->A | LOC_Os08g14090(LOC_Os08g14090.1) | Non-Synonymous SNP |