Detailed information of SNP:
|
SNP ID:
sf0808430811(Gbrowse)
Chromosome: chr08 Position: 8430811 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 94.08% | 5.92% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808430811 | A->G | LOC_Os08g14090(LOC_Os08g14090.1) | INTRON |