Detailed information of SNP:
|
SNP ID:
sf0808434876(Gbrowse)
Chromosome: chr08 Position: 8434876 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.99% | 18.01% |
| All Indica | 797 | 78.04% | 21.96% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 374 | 69.79% | 30.21% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808434876 | C->T | INTERGENIC | None |