Detailed information of SNP:
|
SNP ID:
sf0808436280(Gbrowse)
Chromosome: chr08 Position: 8436280 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 77.58% | 22.42% |
| All Indica | 787 | 65.44% | 34.56% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 50.96% | 49.04% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808436280 | C->A | INTERGENIC | None |