Detailed information of SNP:
|
SNP ID:
sf0808438431(Gbrowse)
Chromosome: chr08 Position: 8438431 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 85.81% | 14.19% |
| All Indica | 779 | 78.82% | 21.18% |
| All Japonica | 491 | 96.54% | 3.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 75.14% | 24.86% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 208 | 75.96% | 24.04% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 9 | 55.56% | 44.44% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808438431 | G->T | LOC_Os08g14109(LOC_Os08g14109.1) | INTRON |