Detailed information of SNP:
|
SNP ID:
sf0808440339(Gbrowse)
Chromosome: chr08 Position: 8440339 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 80.76% | 19.24% |
| All Indica | 799 | 72.34% | 27.66% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808440339 | G->A | LOC_Os08g14109(LOC_Os08g14109.1) | INTRON |