Detailed information of SNP:
|
SNP ID:
sf0808450672(Gbrowse)
Chromosome: chr08 Position: 8450672 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 66.06% | 33.94% |
| All Indica | 753 | 52.72% | 47.28% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 63 | 15.87% | 84.13% |
| Indica I | 354 | 49.44% | 50.56% |
| Indica II | 199 | 60.80% | 39.20% |
| Indica Intermediate | 200 | 50.50% | 49.50% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808450672 | T->C | LOC_Os08g14140(LOC_Os08g14140.1) | Non-Synonymous SNP |