Detailed information of SNP:
|
SNP ID:
sf0808452563(Gbrowse)
Chromosome: chr08 Position: 8452563 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 88.18% | 11.82% |
| All Indica | 789 | 82.89% | 17.11% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 370 | 80.81% | 19.19% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 207 | 80.19% | 19.81% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808452563 | C->T | INTERGENIC | None |