Detailed information of SNP:
|
SNP ID:
sf0808454947(Gbrowse)
Chromosome: chr08 Position: 8454947 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 91.92% | 8.08% |
| All Indica | 786 | 98.73% | 1.27% |
| All Japonica | 490 | 79.39% | 20.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 364 | 97.80% | 2.20% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 79.88% | 20.12% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 63 | 53.97% | 46.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808454947 | G->A | LOC_Os08g14160(LOC_Os08g14160.1) | Non-Synonymous SNP |