Detailed information of SNP:
|
SNP ID:
sf0808526215(Gbrowse)
Chromosome: chr08 Position: 8526215 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 63.54% | 36.46% |
| All Indica | 798 | 55.51% | 44.49% |
| All Japonica | 497 | 71.23% | 28.77% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 51.60% | 48.40% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 79.40% | 20.60% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808526215 | A->G | INTERGENIC | None |