Detailed information of SNP:
|
SNP ID:
sf0808573598(Gbrowse)
Chromosome: chr08 Position: 8573598 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.96% | 36.04% |
| All Indica | 796 | 45.98% | 54.02% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 372 | 35.22% | 64.78% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808573598 | C->T | LOC_Os08g14310(LOC_Os08g14310.1) | Non-Synonymous SNP |