Detailed information of SNP:
|
SNP ID:
sf0808584114(Gbrowse)
Chromosome: chr08 Position: 8584114 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1234 | 79.01% | 20.99% |
| All Indica | 718 | 73.40% | 26.60% |
| All Japonica | 394 | 84.77% | 15.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 74.13% | 25.87% |
| Indica II | 191 | 77.49% | 22.51% |
| Indica Intermediate | 183 | 67.76% | 32.24% |
| Temperate Japonica | 256 | 78.91% | 21.09% |
| Tropical Japonica | 75 | 94.67% | 5.33% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808584114 | G->A | INTERGENIC | None |