Detailed information of SNP:
|
SNP ID:
sf0808603848(Gbrowse)
Chromosome: chr08 Position: 8603848 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1270 | 91.02% | 8.98% |
| All Indica | 741 | 90.82% | 9.18% |
| All Japonica | 433 | 98.61% | 1.39% |
| Aus | 55 | 41.82% | 58.18% |
| Indica I | 358 | 90.22% | 9.78% |
| Indica II | 193 | 89.12% | 10.88% |
| Indica Intermediate | 190 | 93.68% | 6.32% |
| Temperate Japonica | 315 | 99.37% | 0.63% |
| Tropical Japonica | 61 | 95.08% | 4.92% |
| Japonica Intermediate | 57 | 98.25% | 1.75% |
| Group VI/Aromatic | 6 | 83.33% | 16.67% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808603848 | A->C | INTERGENIC | None |