Detailed information of SNP:
|
SNP ID:
sf0808610256(Gbrowse)
Chromosome: chr08 Position: 8610256 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 90.74% | 9.26% |
| All Indica | 764 | 85.34% | 14.66% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 83.24% | 16.76% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 197 | 82.23% | 17.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0808610256 | A->C | INTERGENIC | None |